Demo 5 (PS): Comparing Pose Modules to Manual Scoring Data
Written and last updated September 4, 2025 by Sedona Ewbank, snewbank@stanford.edu
The purpose of this demo is to demonstrate how to compare our pose modules to describable behavior classes using a manual scoring dataset for comparison.
import os
import sys
import importlib
#This block only important for running as script
#script_dir = os.path.dirname(os.path.abspath(__file__))
mariposa_dir = "/Users/snewbank/PycharmProjects/MARIPoSA"
utils_dir = os.path.join(mariposa_dir, 'utils')
sys.path.append(utils_dir)
sys.path.append(mariposa_dir)
#import utils
from utils import metadata, analyze, plot, simulate
importlib.reload(metadata)
importlib.reload(analyze)
importlib.reload(plot)
importlib.reload(simulate)
<module 'utils.simulate' from '/Users/snewbank/PycharmProjects/MARIPoSA/utils/simulate.py'>
demo_dir="/Users/snewbank/Behavior/MARIPoSA_demo_data/"
config=metadata.load_project(demo_dir+"250719_test/config_PS.yaml")
save=True
save_path = demo_dir+"demo_figures/"
if not os.path.exists(save_path):
os.makedirs(save_path)
5.1: Remapping pose modules to grouped classes
It is simple to remap pose modules to groups however you like - perhaps from visual inspection or some other approach to grouping. To do so, you just reset the “remappings” key from the config (either in python or directly in the config file). Then, when you create a labels_df object, use analyze.combine_pose_modules to remap modules to their assigned remapping class.
config["remappings"] = [[[0,1,2,3,4,5,6,7,8,9,10,11,12,13,14],"modules_0-14"],
[[15,16,17,18,19,20,21,22,23,24,25,26,27,28,29],"modules_15-29"]]
labels_df = analyze.get_module_labels(config,0,1200,subgroups=["sal","k1","k5","k10"])
display(labels_df)
module_usage = analyze.get_module_usage(config,labels_df)
fig = plot.plot_module_usage(config,
module_usage,
style="bar_error",
figW=8,
figH=4,
cmap="viridis_r")
labels_df_remap = analyze.combine_pose_modules(config,labels_df)
display(labels_df_remap)
module_usage = analyze.get_module_usage(config,labels_df,modules_altered=True) # you must set modules_altered = True to get the correct behavior if you have altered the modules, i.e. by remapping to manual scoring class
fig = plot.plot_module_usage(config,
module_usage,
style="bar_error",
figW=8,
figH=4,
cmap="viridis_r")
if save:
fig.savefig(save_path+"demo5-1_boris_remapped_usage.png",dpi=300)
| sal | k1 | ... | k5 | k10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2023-06-15_21-28-12_bf04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-15_22-01-50_bf03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_15-41-01_bm03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_16-13-48_bm04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_17-21-51_bf02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_16-15-21_bm02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_19-20-49_bf01_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_19-10-38_bf04_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_15-35-45_bf01_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_19-00-05_bm02_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | ... | 2023-07-08_16-19-27_bm02_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_16-25-47_bf01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_19-35-14_bm03_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_16-47-52_bf03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_18-18-22_bf04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-25_14-30-54_bm02_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-31_17-08-06_bf01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-13_15-45-26_bm03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_13-56-09_bm01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_18-19-50_bm04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | |
| 0 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 1 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 2 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 3 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 4 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 3 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 35995 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 28 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35996 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 28 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35997 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35998 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35999 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 1 | 3 | 8 | 8 |
36000 rows × 26 columns
Applying 2 remapping rules from config.
1 of 2: Remapping [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14] to modules_0-14
2 of 2: Remapping [15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29] to modules_15-29
| sal | k1 | ... | k5 | k10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2023-06-15_21-28-12_bf04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-15_22-01-50_bf03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_15-41-01_bm03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_16-13-48_bm04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_17-21-51_bf02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_16-15-21_bm02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_19-20-49_bf01_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_19-10-38_bf04_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_15-35-45_bf01_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_19-00-05_bm02_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | ... | 2023-07-08_16-19-27_bm02_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_16-25-47_bf01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_19-35-14_bm03_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_16-47-52_bf03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_18-18-22_bf04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-25_14-30-54_bm02_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-31_17-08-06_bf01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-13_15-45-26_bm03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_13-56-09_bm01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_18-19-50_bm04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | |
| 0 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_15-29 | ... | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 |
| 1 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_15-29 | ... | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 |
| 2 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_15-29 | ... | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 |
| 3 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_15-29 | ... | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 |
| 4 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_0-14 | modules_0-14 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 35995 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 |
| 35996 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_15-29 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 |
| 35997 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 |
| 35998 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 |
| 35999 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | ... | modules_0-14 | modules_15-29 | modules_15-29 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 | modules_0-14 |
36000 rows × 26 columns
5.2: Incorporating manual scoring data from BORIS to remap modules
The approach used in MARIPoSA for identifying the behaviors represented by pose modules is to compare to manual scoring data. We have found it is simplest to use manual scoring data incorporated from BORIS and exported in the frame rate of the video as one-hot encoded csv. We then need to set the BORIS csv directory path and the pairings of videos and their corresponding project file within the config.
print("Before editing (default):")
print(config['boris_directory'])
print(config['boris_to_pose_pairings'])
config['boris_directory'] = demo_dir + "PS-TEST-25-03-31-ManualScoring/"
config['boris_to_pose_pairings'] = [
['BINARY_2023-05-09_17-41-11_bf01_nal10k10.csv','2023-05-09_17-41-11_bf01_nal10k10DLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_13-39-15_bm01_k25.csv','2023-05-30_13-39-15_bm01_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_1_2023-05-31_12-02-23_bf02_coc.csv','2023-05-31_12-02-23_bf02_cocDLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_2023-06-15_19-15-24_bm04_nalket.csv','2023-06-15_19-15-24_bm04_nalketDLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_2023-06-15_17-16-18_bm01_k5iv.csv','2023-06-15_17-16-18_bm01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_2023-06-09_18-18-49_bm02_k25.csv','2023-06-09_18-18-49_bm02_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_2023-07-08_15-13-11_bf03_k25.csv','2023-07-08_15-13-11_bf03_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'],
['BINARY_bf01_k5.csv','2023-06-20_16-46-29_bf01_k5DLC_resnet101_DevRats2Jul21shuffle1_500000']
]
print("After editing:")
print(config['boris_directory'])
print(config['boris_to_pose_pairings'])
Before editing (default):
None
[[None, None], [None, None], [None, None]]
After editing:
/Users/snewbank/Behavior/MARIPoSA_demo_data/PS-TEST-25-03-31-ManualScoring/
[['BINARY_2023-05-09_17-41-11_bf01_nal10k10.csv', '2023-05-09_17-41-11_bf01_nal10k10DLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_13-39-15_bm01_k25.csv', '2023-05-30_13-39-15_bm01_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_1_2023-05-31_12-02-23_bf02_coc.csv', '2023-05-31_12-02-23_bf02_cocDLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_2023-06-15_19-15-24_bm04_nalket.csv', '2023-06-15_19-15-24_bm04_nalketDLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_2023-06-15_17-16-18_bm01_k5iv.csv', '2023-06-15_17-16-18_bm01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_2023-06-09_18-18-49_bm02_k25.csv', '2023-06-09_18-18-49_bm02_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_2023-07-08_15-13-11_bf03_k25.csv', '2023-07-08_15-13-11_bf03_k25DLC_resnet101_DevRats2Jul21shuffle1_500000'], ['BINARY_bf01_k5.csv', '2023-06-20_16-46-29_bf01_k5DLC_resnet101_DevRats2Jul21shuffle1_500000']]
Once we have done that, we can then look at the overlap between manually scored behaviors and pose modules:
BORIS_to_pose_mat, BORIS_to_pose_mat_normalized, loss = analyze.BORIS_to_pose(config)
fig = plot.BORIS_to_pose_matrix_plot(config, BORIS_to_pose_mat_normalized, figW=3, figH=2, cmap="Greens",outline_top_match=True)
if save:
fig.savefig(save_path+"demo5-2_boris_to_pose_matrix.png",dpi=500)
done with ['BINARY_2023-05-09_17-41-11_bf01_nal10k10.csv', '2023-05-09_17-41-11_bf01_nal10k10DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_13-39-15_bm01_k25.csv', '2023-05-30_13-39-15_bm01_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_1_2023-05-31_12-02-23_bf02_coc.csv', '2023-05-31_12-02-23_bf02_cocDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-15_19-15-24_bm04_nalket.csv', '2023-06-15_19-15-24_bm04_nalketDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-15_17-16-18_bm01_k5iv.csv', '2023-06-15_17-16-18_bm01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-09_18-18-49_bm02_k25.csv', '2023-06-09_18-18-49_bm02_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-07-08_15-13-11_bf03_k25.csv', '2023-07-08_15-13-11_bf03_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_bf01_k5.csv', '2023-06-20_16-46-29_bf01_k5DLC_resnet101_DevRats2Jul21shuffle1_500000']
VAME modules map onto scored behaviors with 'loss' of 0.47849370930131485
Once you have the manually scored class for each module, you can remap them to compare usage of grouped modules.
# First, we'll do our dose-response with modules not grouped:
labels_df = analyze.get_module_labels(config,0,1200,subgroups=["sal","k1","k5","k10"])
display(labels_df)
module_usage = analyze.get_module_usage(config,labels_df)
fig = plot.plot_module_usage(config,
module_usage,
style="bar_error",
figW=8,
figH=4,
cmap="viridis_r")
# Then we can look at our dose-response data with modules remapped to their manual score overlap
BORIS_to_pose_mat, BORIS_to_pose_mat_normalized, loss = analyze.BORIS_to_pose(config)
labels_df_remap = analyze.make_remappings_from_BORIS(config,labels_df = labels_df, BORIS_to_pose_mat = BORIS_to_pose_mat)
display(labels_df_remap)
module_usage = analyze.get_module_usage(config,labels_df,modules_altered=True) # you must set modules_altered = True to get the correct behavior if you have altered the modules, i.e. by remapping to manual scoring class
fig = plot.plot_module_usage(config,
module_usage,
style="bar_error",
figW=8,
figH=4,
cmap="viridis_r")
if save:
fig.savefig(save_path+"demo5-3_boris_remapped_usage.png",dpi=300)
| sal | k1 | ... | k5 | k10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2023-06-15_21-28-12_bf04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-15_22-01-50_bf03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_15-41-01_bm03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_16-13-48_bm04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_17-21-51_bf02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_16-15-21_bm02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_19-20-49_bf01_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_19-10-38_bf04_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_15-35-45_bf01_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_19-00-05_bm02_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | ... | 2023-07-08_16-19-27_bm02_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_16-25-47_bf01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_19-35-14_bm03_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_16-47-52_bf03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_18-18-22_bf04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-25_14-30-54_bm02_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-31_17-08-06_bf01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-13_15-45-26_bm03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_13-56-09_bm01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_18-19-50_bm04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | |
| 0 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 1 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 2 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 3 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 23 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| 4 | 0 | 9 | 0 | 10 | 17 | 17 | 20 | 9 | 9 | 3 | ... | 5 | 2 | 19 | 0 | 12 | 12 | 0 | 19 | 12 | 12 |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 35995 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 28 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35996 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 28 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35997 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35998 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 8 | 3 | 8 | 8 |
| 35999 | 17 | 27 | 13 | 13 | 12 | 13 | 27 | 25 | 8 | 1 | ... | 1 | 27 | 27 | 10 | 13 | 4 | 1 | 3 | 8 | 8 |
36000 rows × 26 columns
done with ['BINARY_2023-05-09_17-41-11_bf01_nal10k10.csv', '2023-05-09_17-41-11_bf01_nal10k10DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_13-39-15_bm01_k25.csv', '2023-05-30_13-39-15_bm01_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_1_2023-05-31_12-02-23_bf02_coc.csv', '2023-05-31_12-02-23_bf02_cocDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-15_19-15-24_bm04_nalket.csv', '2023-06-15_19-15-24_bm04_nalketDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-15_17-16-18_bm01_k5iv.csv', '2023-06-15_17-16-18_bm01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-06-09_18-18-49_bm02_k25.csv', '2023-06-09_18-18-49_bm02_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_2023-07-08_15-13-11_bf03_k25.csv', '2023-07-08_15-13-11_bf03_k25DLC_resnet101_DevRats2Jul21shuffle1_500000']
done with ['BINARY_bf01_k5.csv', '2023-06-20_16-46-29_bf01_k5DLC_resnet101_DevRats2Jul21shuffle1_500000']
VAME modules map onto scored behaviors with 'loss' of 0.47849370930131485
Applying 30 remapping rules from config.
1 of 30: Remapping [0] to ataxic 1-2
2 of 30: Remapping [1] to explore
3 of 30: Remapping [2] to ataxic 1-2
4 of 30: Remapping [3] to walk
5 of 30: Remapping [4] to explore
6 of 30: Remapping [5] to walk
7 of 30: Remapping [6] to groom
8 of 30: Remapping [7] to explore
9 of 30: Remapping [8] to explore
10 of 30: Remapping [9] to explore
11 of 30: Remapping [10] to rest
12 of 30: Remapping [11] to rest
13 of 30: Remapping [12] to rest
14 of 30: Remapping [13] to rest
15 of 30: Remapping [14] to explore
16 of 30: Remapping [15] to walk
17 of 30: Remapping [16] to rest
18 of 30: Remapping [17] to explore
19 of 30: Remapping [18] to rest
20 of 30: Remapping [19] to explore
21 of 30: Remapping [20] to walk
22 of 30: Remapping [21] to ataxic 1-2
23 of 30: Remapping [22] to ataxic 1-2
24 of 30: Remapping [23] to walk
25 of 30: Remapping [24] to explore
26 of 30: Remapping [25] to rest
27 of 30: Remapping [26] to rest
28 of 30: Remapping [27] to rest
29 of 30: Remapping [28] to rest
30 of 30: Remapping [29] to explore
| sal | k1 | ... | k5 | k10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2023-06-15_21-28-12_bf04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-15_22-01-50_bf03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_15-41-01_bm03_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_16-13-48_bm04_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_17-21-51_bf02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_16-15-21_bm02_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-03_19-20-49_bf01_salivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-20_19-10-38_bf04_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_15-35-45_bf01_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-06-26_19-00-05_bm02_k1ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | ... | 2023-07-08_16-19-27_bm02_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_16-25-47_bf01_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_19-35-14_bm03_k5ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_16-47-52_bf03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-15_18-18-22_bf04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-25_14-30-54_bm02_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-05-31_17-08-06_bf01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-13_15-45-26_bm03_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-14_13-56-09_bm01_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | 2023-07-18_18-19-50_bm04_k10ivDLC_resnet101_DevRats2Jul21shuffle1_500000 | |
| 0 | ataxic 1-2 | explore | ataxic 1-2 | rest | explore | explore | walk | explore | explore | walk | ... | walk | ataxic 1-2 | explore | ataxic 1-2 | rest | rest | ataxic 1-2 | explore | rest | rest |
| 1 | ataxic 1-2 | explore | ataxic 1-2 | rest | explore | explore | walk | explore | explore | walk | ... | walk | ataxic 1-2 | explore | ataxic 1-2 | rest | rest | ataxic 1-2 | explore | rest | rest |
| 2 | ataxic 1-2 | explore | ataxic 1-2 | rest | explore | explore | walk | explore | explore | walk | ... | walk | ataxic 1-2 | explore | ataxic 1-2 | rest | rest | ataxic 1-2 | explore | rest | rest |
| 3 | ataxic 1-2 | explore | ataxic 1-2 | rest | explore | explore | walk | explore | explore | walk | ... | walk | ataxic 1-2 | explore | ataxic 1-2 | rest | rest | ataxic 1-2 | explore | rest | rest |
| 4 | ataxic 1-2 | explore | ataxic 1-2 | rest | explore | explore | walk | explore | explore | walk | ... | walk | ataxic 1-2 | explore | ataxic 1-2 | rest | rest | ataxic 1-2 | explore | rest | rest |
| ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... | ... |
| 35995 | explore | rest | rest | rest | rest | rest | rest | rest | explore | explore | ... | explore | rest | rest | rest | rest | explore | explore | walk | explore | explore |
| 35996 | explore | rest | rest | rest | rest | rest | rest | rest | explore | explore | ... | explore | rest | rest | rest | rest | explore | explore | walk | explore | explore |
| 35997 | explore | rest | rest | rest | rest | rest | rest | rest | explore | explore | ... | explore | rest | rest | rest | rest | explore | explore | walk | explore | explore |
| 35998 | explore | rest | rest | rest | rest | rest | rest | rest | explore | explore | ... | explore | rest | rest | rest | rest | explore | explore | walk | explore | explore |
| 35999 | explore | rest | rest | rest | rest | rest | rest | rest | explore | explore | ... | explore | rest | rest | rest | rest | explore | explore | walk | explore | explore |
36000 rows × 26 columns
